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Example Gallery

Browse selected HiMaLAYAS example outputs. These examples are illustrative documentation assets; submitted manuscript figure numbering is tracked in the himalayas-publication repository.

Yeast genetic interaction profile similarity matrix. Yeast genetic interaction profile similarity matrix with enrichment-guided cluster annotations. Dataset: Costanzo et al. (2016) · Annotation: GO BP (yeast)
Yeast genetic interaction profile similarity matrix
Yeast genetic interaction profile similarity matrix with row tracks. Yeast genetic interaction profile similarity matrix with essentiality and single-mutant fitness row tracks. Dataset: Costanzo et al. (2016) · Annotation: GO BP (yeast) · Row tracks: essentiality and single-mutant fitness
Yeast genetic interaction profile similarity matrix with row tracks
Yeast pan-transcriptome example. Yeast pan-transcriptome expression matrix. Dataset: Caudal et al. (2024) · Annotation: GO BP (yeast)
Yeast pan-transcriptome expression matrix
Yeast GI-score example. Yeast genetic interaction score matrix. Dataset: Costanzo et al. (2016) · Annotation: GO BP (yeast)
Yeast genetic interaction score matrix
WIOD country-sector input-output example. Non-biological country-sector input-output matrix annotated by country metadata. Dataset: WIOD 2016 release, 2014 table · Annotation: Country metadata
WIOD country-sector input-output matrix
World Wide Dishes recipe-ingredient example. Non-biological recipe-ingredient matrix annotated by country metadata. Dataset: World Wide Dishes · Annotation: Country metadata
World Wide Dishes recipe-ingredient matrix

Citations

Yeast genetic interaction profile similarity, row-track, and GI-score examples
Costanzo, M., VanderSluis, B., Koch, E. N., et al. (2016)
A global genetic interaction network maps a wiring diagram of cellular function
Science 353, aaf1420.

Yeast pan-transcriptome example
Caudal, E., Loegler, V., Dutreux, F., et al. (2024)
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast
Nature.

WIOD country-sector input-output example
Timmer, M. P., Dietzenbacher, E., Los, B., Stehrer, R., and de Vries, G. J. (2015)
An Illustrated User Guide to the World Input–Output Database: the Case of Global Automotive Production
Review of International Economics 23, 575–605.

World Wide Dishes recipe example
Magomere, J., Ishida, S., Afonja, T., Salama, A., Kochin, D., Yuehgoh, F., Hamzaoui, I., Sefala, R., Alaagib, A., Dalal, S., Marchegiani, B., Semenova, E., Crais, L., and Mackenzie Hall, S. (2024; revised 2025)
The World Wide recipe: A community-centred framework for fine-grained data collection and regional bias operationalisation
arXiv 2406.09496. https://doi.org/10.48550/arXiv.2406.09496

Generated with HiMaLAYAS
Horecka, I., and Röst, H. (2026)
HiMaLAYAS: enrichment-based annotation and visualization of hierarchically clustered matrices
bioRxiv. https://www.biorxiv.org/content/10.64898/2026.02.11.705303v3